Download TRAMS for Windows 7 - Python-based SNP annotation software

TRAMS 1.0.2

Python-based SNP annotation software

Python-based SNP annotation software

Publisher review for TRAMS 1.0.2:

Review by: Richard Reumerman
TRAMS, also known as Tool for Rapid Annotation of Microbial SNPs, is a program for functional annotation of genomic SNPs which is available to download as a single file executable for WINDOWS users with limited computational experience and as a Python script for Mac OS and Linux users.



TRAMS needs only a tab delimited text file containing SNP locations, reference nucleotide and SNPs in different strains along with a reference genome sequence in standard GenBank or EMBL format.



TRAMS annotates SNPs as synonymous, non-synonymous or nonsense. Non-synonymous SNPs in start and stop codons are separated as non-start and non-stop SNPs, respectively. SNPs in overlapping features are annotated separately for each feature and multiple nucleotide polymorphisms (MNPs) within a codon are combined prior to annotation.

Requirements:


Operating system:
Windows XP / XP 64 bit / Vista / Vista 64 bit / 7 / 7 64 bit

TRAMS download tags:

SNP annotation prokaryote annotation gene annotation prokaryote

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